On Monday, August 18, 2003, at 09:36 AM, Thomas Goddard wrote: > Hi Jakob, > > To change the background color in Chimera use Favorites/Preferences, > category Background, and click on the "Background color" button. That > will bring up the color chooser, and you can set the color to white > for printing.

Dec 18, 2020 Download UCSF Chimera - Visualize and analyze molecular should also know that UCSF Chimera enables you to change the background, namely you can change the graphics window to a single color, a vertical gradient ..

Hi Francesco,you can change the background colour in Chimera: Actions->Color->background, then Actions->Color->[choose your colour like you would for colouring atoms etc.]. Then just save your image as usual and it should be on a white background. from editor - open the Color Editor and use its current color; apply any color adjustments made in the Color Editor until it is closed or reassigned to a different coloring operation by clicking a color well. If during that time the selection is changed, any color adjustments will be applied to the new selection. >>To change the background color in Chimera use Favorites/Preferences, >category Background, and click on the "Background color" button. That >will bring up the color chooser, and you can set the color to white >for printing.

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On Monday, August 18, 2003, at 09:36 AM, Thomas Goddard wrote: > Hi Jakob, > > To change the background color in Chimera use Favorites/Preferences, > category Background, and click on the "Background color" button. That > will bring up the color chooser, and you can set the color … 2016-12-09 UCSF Chimera is a program for the interactive visualization and analysis of molecular structures and related data, including density maps, trajectories, and sequence alignments. It is available free of charge for noncommercial use. Commercial users, please see Chimera commercial licensing. You can try the commands in the Command Line to see what works before putting them into a script. For saving images, you might want to make the background white (set bg_color white) before using the script, or after opening each structure use the ribbons preset and then a publication preset (preset apply int 1; preset apply pub 1) instead of ribbon and ribrep rounded.

UCSF Chimera is a streamlined yet powerful piece of software that aims to provide you with all the necessary tools for visualizing and analyzing molecular structures.. Furthermore, the app is well

About Chimera. About Chimera, It is a software for 3D visualization and analysis of molecular structures. Chimera is developed by the Resource for Biocomputing, Visualization and Informatics at the University of California, San Click on the color well.

The background color can be changed: with the command background; in the Background preferences; in the Color Actions dialog by using a preset. The first two also allow using a gradient of multiple colors or an image read from a file as the background. Other window-related commands are windowsize and windoworigin.

UCSF ChimeraX (or simply ChimeraX) is the next-generation molecular visualization program from the Resource for Biocomputing, Visualization, and Informatics (RBVI), following UCSF Chimera. ChimeraX can be downloaded free of charge for academic, government, nonprofit, and personal use.

Users can easily import structure-related data into Chimera in the form of attributes, or values associated with atoms, residues, or models.The data can be imported with Define Attribute and then represented visually with color ranges, atomic radii, or "worm" thickness. Such data can also be manipulated programmatically in Chimera, and in fact Chimera was designed with High quality imaging for publication. Chimera Introduction to Protein Structure Bioinformatics 2007 Vincent Zoete – 02/23/2007 ­ 1/21 ­ UCSF Chimera (or simply Chimera) is an extensible program for interactive visualization and analysis of molecular structures and related data, including density maps, supramolecular assemblies, sequence alignments, docking results, trajectories, and conformational ensembles. High-quality images and movies can be created. Chimera includes complete documentation and can be downloaded free of 2019-04-18 UCSF Chimera. UCSF Chimera is a Color atoms in a protein according to B-factor values Color residues according to kdHydrophobicity values 10. Animation.
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UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab Department of Pharmaceutical Chemistry University of California, San Francisco On Sep 27, 2010 On Oct 22, 2008, at 1:52 PM, Chin-Hsien (Emily) Tai wrote: > > We would like to use Chimera as a visualizing/figure drawing tool to > compare different domain parsing schemes and we are wondering how to > automate the process as much as possible. Elaine Meng meng at cgl.ucsf.edu Wed Oct 30 10:10:19 PDT 2013. Previous message: [Chimera-users] color a small molecule in a .mol2 file by red to blue gradient of the partial charges Next message: [Chimera-users] how to make the background of Chimera-generated images transparent Messages sorted by: If you use “target ac” instead (even if the atoms aren’t shown), then as long as the color zone distance is big enough, I think you will get the color zones you expect. I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco > On Aug 20, 2019, at 10:54 AM With background transparency, if the Chimera background is a single solid color, it will be completely invisible in the saved images.

UCSF ChimeraX (or simply ChimeraX) is the next-generation molecular visualization program from the Resource for Biocomputing, Visualization amd Informatics (RBVI), an NIH Biomedical Technology Research Resource (Goddard et al. 2018).. In the long run it is intended to replace UCSF Chimera (Pettersen et al. 2004) for molecular graphics visualization.
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The background color is set to black and the ribbon path method to B-spline. Interactive 1 (ribbons) - shows most peptide and nucleic acid chains as ribbons, plus atomic detail (excluding hydrogens on carbon atoms) for residues within 3.6 Å of a ligand residue or metal ion.

UCSF Chimera… [Chimera-users] [chimera-users]about "color key" C.J. biocjh at gmail.com Wed Dec 22 23:26:03 PST 2010.